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compute tSNE embedding for MRF similarity matrix

Usage

mrf3_tsne(
  mod,
  dims = 2,
  max_iter = 1000,
  learning_rate = 200,
  verbose = FALSE,
  tol = 1e-05,
  patience = 10,
  seed = NULL
)

Arguments

mod

mrf3 model

dims

Number of dims

max_iter

integer; Number of iterations (default: 1000)

learning_rate

numeric; Learning rate (default: 200.0)

verbose

Logical; whether to print optimization progress.

tol

Convergence tolerance.

patience

Early-stopping patience measured in iterations.

seed

Optional integer seed used only to initialize the embedding.

Value

Two dimensional tSNE embedding